SMTL ID : 6zhj.1

3D electron diffraction structure of thermolysin from Bacillus thermoproteolyticus

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 3.26 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.142, E.143, H.146, Y.157, E.166, H.231 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.142, A:E.143, A:Y.157, A:E.166, A:E.166

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, G.189, E.190 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.187, A:E.190, A:E.190 CA.3: 6 residues within 4Å: Chain A: E.177, K.182, N.183, D.185, E.190, D.191 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.177, A:N.183 CA.4: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.57, A:D.57, A:D.59, A:Q.61 CA.5: 6 residues within 4Å: Chain A: E.190, Y.193, T.194, I.197, S.198, D.200 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Y.193, A:T.194, A:T.194, A:I.197, A:D.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, T.B. et al., Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-01-27

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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