SMTL ID : 6zvi.1

Mbf1-ribosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain 3: C.36, C.39, C.55, S.57, C.58 2 PLIP interactions: 2 interactions with chain 3 Metal complexes: 3:C.36, 3:C.55 ZN.2: 5 residues within 4Å: Chain 9: I.35, C.36, R.37, Q.38, C.39 1 PLIP interactions: 1 interactions with chain 9 Metal complexes: 9:C.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sinha, N.K. et al., EDF1 coordinates cellular responses to ribosome collisions. Elife (2020)

Release Date

2020-09-09

Peptides

40S ribosomal protein S0-A: E
RPS1A isoform 1: F
RPS2 isoform 1: G
RPS3 isoform 1: H
40S ribosomal protein S4-A: I
Rps5p: J
40S ribosomal protein S6-A: K
40S ribosomal protein S7-A: L
40S ribosomal protein S8-A: M
40S ribosomal protein S9-A: N
40S ribosomal protein S10-A: O
40S ribosomal protein S11-A: P
RPS12 isoform 1: Q
40S ribosomal protein S13: R
RPS15 isoform 1: S
40S ribosomal protein S16-A: T
40S ribosomal protein S17-A: U
40S ribosomal protein S18-A: V
40S ribosomal protein S19-A: W
RPS20 isoform 1: X
40S ribosomal protein S21-A: Y
RPS22A isoform 1: Z
40S ribosomal protein S23-A: 0
40S ribosomal protein S24-A: 1
RPS25A isoform 1: 2
40S ribosomal protein S27-A: 3
RPS28A isoform 1: 4
40S ribosomal protein S30-A: 5
RPS31 isoform 1: 6
Guanine nucleotide-binding protein subunit beta-like protein: 7
MBF1 isoform 1: 8
RPS29A isoform 1: 9
40S ribosomal protein S14-B: a
RPS26B isoform 1: b

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
i

F
j

G
k

H
l

I
m

J
n

K
o

L
p

M
q

N
r

O
s

P
t

Q
u

R
v

S
x

T
y

U
z

V
A

W
B

X
C

Y
D

Z
E

0
H

1
I

2
J

3
L

4
N

5
P

6
Q

7
R

8
T

9
O

a
w

b
K

40S ribosomal protein S0-A

RPS1A isoform 1

RPS2 isoform 1

RPS3 isoform 1

40S ribosomal protein S4-A

Rps5p

40S ribosomal protein S6-A

40S ribosomal protein S7-A

40S ribosomal protein S8-A

40S ribosomal protein S9-A

40S ribosomal protein S10-A

40S ribosomal protein S11-A

RPS12 isoform 1

40S ribosomal protein S13

RPS15 isoform 1

40S ribosomal protein S16-A

40S ribosomal protein S17-A

40S ribosomal protein S18-A

40S ribosomal protein S19-A

RPS20 isoform 1

40S ribosomal protein S21-A

RPS22A isoform 1

40S ribosomal protein S23-A

40S ribosomal protein S24-A

RPS25A isoform 1

40S ribosomal protein S27-A

RPS28A isoform 1

40S ribosomal protein S30-A

RPS31 isoform 1

Guanine nucleotide-binding protein subunit beta-like protein

MBF1 isoform 1

RPS29A isoform 1

40S ribosomal protein S14-B

RPS26B isoform 1

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