SMTL ID : 5ll6.1

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-oligomer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Covalent)

SF4.1: 11 residues within 4Å: Chain T: A.9, C.29, P.30, I.39, C.55, I.56, G.57, C.58, G.59, I.60, C.61 5 PLIP interactions: 5 interactions with chain T, Metal complexes: T:C.29, T:C.55, T:G.57, T:C.58, T:C.61 SF4.2: 10 residues within 4Å: Chain T: C.16, K.17, P.18, C.21, Q.23, E.24, C.25, A.48, C.65, I.70 3 PLIP interactions: 3 interactions with chain T, Metal complexes: T:C.21, T:C.25, T:C.65

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 20 residues within 4Å: Chain T: Y.87, F.92, N.112, G.113, I.114, G.115, K.116, S.117, T.118, Q.171, H.279, S.299, Q.463, H.467, S.469, G.470, G.471, E.472, Y.497 Ligands: MG.4 20 PLIP interactions: 20 interactions with chain T Hydrogen bonds: T:G.113, T:G.113, T:I.114, T:G.115, T:K.116, T:K.116, T:S.117, T:S.117, T:T.118, T:Q.171, T:H.279, T:Q.463, T:H.467, T:S.469, T:G.470, T:G.471, T:E.472, T:Y.497 pi-Stacking: T:Y.87, T:Y.87 ANP.5: 16 residues within 4Å: Chain T: R.217, K.221, L.222, S.223, G.225, E.226, Q.363, D.365, F.366, N.387, G.388, G.390, K.391, T.392, T.393, H.526 16 PLIP interactions: 16 interactions with chain T Hydrogen bonds: T:R.217, T:K.221, T:K.221, T:L.222, T:S.223, T:S.223, T:G.225, T:E.226, T:E.226, T:G.388, T:G.390, T:K.391, T:T.392, T:T.392, T:T.393, T:D.492

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain T: S.117, Q.171, S.469, G.470 Ligands: ANP.3 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:S.117, T:S.469

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heuer, A. et al., Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-04-12

Peptides

40S ribosomal protein S0-A: B
40S ribosomal protein S1-A: C
40S ribosomal protein S2: D
40S ribosomal protein S4-A: E
40S ribosomal protein S6-A: F
40S ribosomal protein S7-A: G
40S ribosomal protein S8-A: H
40S ribosomal protein S9-A: I
40S ribosomal protein S11-A: J
40S ribosomal protein S13: K
40S ribosomal protein S14-A: L
40S ribosomal protein S21-A: M
40S ribosomal protein S22-A: N
40S ribosomal protein S23-A: O
40S ribosomal protein S24-A: P
40S ribosomal protein S26-A: Q
40S ribosomal protein S27-A: R
40S ribosomal protein S30-A: S
Translation initiation factor RLI1: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
P

C
Q

D
R

E
S

F
T

G
U

H
V

I
W

J
X

K
Y

L
Z

M
a

N
b

O
c

P
d

Q
e

R
f

S
g

T
h

40S ribosomal protein S0-A

40S ribosomal protein S1-A

40S ribosomal protein S2

40S ribosomal protein S4-A

40S ribosomal protein S6-A

40S ribosomal protein S7-A

40S ribosomal protein S8-A

40S ribosomal protein S9-A

40S ribosomal protein S11-A

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S21-A

40S ribosomal protein S22-A

40S ribosomal protein S23-A

40S ribosomal protein S24-A

40S ribosomal protein S26-A

40S ribosomal protein S27-A

40S ribosomal protein S30-A

Translation initiation factor RLI1

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