SMTL ID : 6zwo.1

cryo-EM structure of human mTOR complex 2, focused on one half

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 10 residues within 4Å: Chain A: S.2165, K.2187, E.2190, I.2237, G.2238, W.2239, V.2240, T.2245, M.2345, D.2357 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.2165, A:Q.2167, A:Q.2167, A:G.2238, A:V.2240, A:T.2245, A:T.2245, A:D.2357 Salt bridges: A:K.2166, A:K.2187 pi-Stacking: A:W.2239 AGS.4: 7 residues within 4Å: Chain C: K.541, N.543, R.572, R.575, R.576, Y.579, L.587 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.543, C:N.543 Salt bridges: C:R.572, C:R.575, C:R.576, C:R.576

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 8 residues within 4Å: Chain A: K.1655, S.1658, K.1662, Y.1698, K.1702, R.1749, K.1753, W.1786 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.1658 Salt bridges: A:K.1655, A:K.1655, A:K.1655, A:K.1662, A:K.1662, A:K.1702, A:K.1702, A:K.1702, A:R.1749, A:K.1753, A:K.1753

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain C: H.1515, C.1520, C.1523, C.1651 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.1515, C:C.1520, C:C.1523, C:C.1651

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.5: 7 residues within 4Å: Chain C: R.293, W.295, Y.391, L.847, Y.970 Chain D: A.1, F.2 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.391 Hydrogen bonds: C:Y.970

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaiola, A. et al., The 3.2- angstrom resolution structure of human mTORC2. Sci Adv (2020)

Release Date

2020-11-18

Peptides

Serine/threonine-protein kinase mTOR: A
Target of rapamycin complex subunit LST8: B
Rapamycin-insensitive companion of mTOR: C
Target of rapamycin complex 2 subunit MAPKAP1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
H

Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

Rapamycin-insensitive companion of mTOR

Target of rapamycin complex 2 subunit MAPKAP1

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