SMTL ID : 7du2.1

RNA polymerase III EC complex in post-translocation state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x A- U- C: RNA (5'-R(P*AP*UP*C)-3')(Non-covalent)

A-U-C.1: 8 residues within 4Å: Chain B: Q.438, P.485, A.688, Q.692, H.1014 Chain S: G.17, A.18, T.19 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.499, D.501, D.503 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.499, A:D.499, A:D.501, A:D.501, A:D.503

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.69, C.72, C.79, H.82 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.72, A:C.79, A:H.82 ZN.4: 8 residues within 4Å: Chain A: C.109, T.111, C.156, C.159, G.160, A.161, F.162, N.163 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.156, A:C.159, A:A.161 ZN.5: 5 residues within 4Å: Chain B: C.1080, C.1083, C.1092, Y.1094, C.1095 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.1080, B:C.1083, B:C.1092, B:Y.1094, B:C.1095 ZN.6: 5 residues within 4Å: Chain F: C.19, C.22, C.36, R.37, C.39 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:C.19, F:C.39 ZN.8: 6 residues within 4Å: Chain K: C.7, T.9, C.10, G.11, C.44, C.45 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.7, K:C.10, K:C.44, K:C.45 ZN.9: 6 residues within 4Å: Chain Q: C.5, C.8, F.23, C.25, N.26, C.28 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:C.5, Q:C.25

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.7: 9 residues within 4Å: Chain G: C.287, C.290, F.293, D.294, I.302, P.304, C.307, M.310 Chain L: N.445 2 PLIP interactions: 2 interactions with chain G, Metal complexes: G:C.287, G:F.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Structure of human RNA polymerase III elongation complex. Cell Res. (2021)

Release Date

2021-03-17

Peptides

DNA-directed RNA polymerase III subunit RPC1: A
DNA-directed RNA polymerase III subunit RPC2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase III subunit RPC8: D
DNA-directed RNA polymerases I and III subunit RPAC2: E
DNA-directed RNA polymerases I, II, and III subunit RPABC4: F
DNA-directed RNA polymerase III subunit RPC6: G
DNA-directed RNA polymerases I, II, and III subunit RPABC1: H
DNA-directed RNA polymerases I, II, and III subunit RPABC2: I
DNA-directed RNA polymerases I, II, and III subunit RPABC3: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5: K
DNA-directed RNA polymerase III subunit RPC3: L
DNA-directed RNA polymerase III subunit RPC7: M
DNA-directed RNA polymerase III subunit RPC9: N
DNA-directed RNA polymerase III subunit RPC5: O
DNA-directed RNA polymerase III subunit RPC4: P
DNA-directed RNA polymerase III subunit RPC10: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
K

F
L

G
P

H
E

I
F

J
H

K
J

L
O

M
Q

N
D

O
M

P
N

Q
I

DNA-directed RNA polymerase III subunit RPC1

DNA-directed RNA polymerase III subunit RPC2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase III subunit RPC8

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit RPC7

DNA-directed RNA polymerase III subunit RPC9

DNA-directed RNA polymerase III subunit RPC5

DNA-directed RNA polymerase III subunit RPC4

DNA-directed RNA polymerase III subunit RPC10

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