SMTL ID : 7edq.1

MIF complex to compound7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

homo-trimer

Ligands

1 x HFC: 6,7-bis(oxidanyl)chromen-2-one

HFC.1: 6 residues within 4Å: Chain A: Q.35, Y.36, W.108, F.113 Chain C: F.49, Y.95 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:Q.35, A:Y.36, A:W.108, A:W.108, C:F.49 Water bridges: A:Q.35 Hydrogen bonds: C:Y.95

8 x CL: CHLORIDE ION

CL.2: 3 residues within 4Å: Chain A: P.1, S.63, I.64 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: M.101, N.102, N.105 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: P.1, S.63, I.64 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: M.101, N.102, N.105 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain C: P.1, S.63, I.64 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: M.101, N.102, N.105 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L. et al., Repurposing old drugs as novel inhibitors of human MIF from structural and functional analysis. Bioorg.Med.Chem.Lett. (2022)

Release Date

2025-03-26

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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