SMTL ID : 7ee8.1

The crystal structure of MIF bound to compound D5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

homo-trimer

Ligands

9 x CL: CHLORIDE ION

CL.1: 2 residues within 4Å: Chain A: S.52, S.53 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: M.101, N.102, N.105 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: G.17, F.18, L.19 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: M.101, N.102, N.105 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: M.101, N.102, N.105 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: P.1, S.63, I.64 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: R.73 Ligand excluded by PLIP

1 x 7Y8: 3-[(2R)-2-azanyl-1-oxidanyl-propyl]phenol

7Y8.4: 5 residues within 4Å: Chain A: K.32, I.64, G.65, A.103, F.113 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.64 Hydrogen bonds: A:I.64 Water bridges: A:G.65

1 x J23: 3-[(2S)-2-azanyl-1-oxidanyl-propyl]phenol

J23.8: 4 residues within 4Å: Chain B: K.32, I.64, A.103, F.113 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.64 Water bridges: B:G.65, B:M.101, B:A.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L. et al., Repurposing old drugs as novel inhibitors of human MIF from structural and functional analysis. Bioorg.Med.Chem.Lett. (2022)

Release Date

2025-03-26

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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