SMTL ID : 7f4g.1

Structure of RPAP2-bound RNA polymerase II

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain G: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.17, G:C.20, G:C.39, G:C.42 ZN.2: 4 residues within 4Å: Chain G: C.86, C.89, C.114, C.119 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.86, G:C.89, G:C.114, G:C.119 ZN.3: 4 residues within 4Å: Chain H: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.44, H:C.45 ZN.4: 4 residues within 4Å: Chain J: C.22, R.37, E.38, C.39 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:E.38 ZN.5: 5 residues within 4Å: Chain K: C.100, C.105, C.136, S.137, C.140 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.100, K:C.105, K:C.136, K:C.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex. Cell Rep (2022)

Release Date

2021-07-07

Peptides

RPB1: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit E: D
DNA-directed RNA polymerase II subunit F: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerase II subunit RPB9: G
RPB10: H
RNA_pol_L_2 domain-containing protein: I
RPB12: J
RPAP2: K
DNA-directed RNA polymerase II subunit RPB4: L
DNA-directed RNA polymerase II subunit RPB7: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
I

H
J

I
K

J
L

K
R

L
D

M
G

RPB1

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

RPB10

RNA_pol_L_2 domain-containing protein

RPB12

RPAP2

DNA-directed RNA polymerase II subunit RPB4

DNA-directed RNA polymerase II subunit RPB7

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