SMTL ID : 7hlh.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z453319206

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 9 residues within 4Å: Chain A: W.76, D.77, S.92, L.93, W.103, W.105, N.168, G.170 Ligands: LWD.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.93, A:N.168, A:N.168 Water bridges: A:F.171 Salt bridges: A:D.77, A:D.77

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: F.91, S.92, N.97 Ligands: LWD.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

1 x LWD: ~{N}-quinolin-6-ylbenzamide(Non-covalent)

LWD.5: 8 residues within 4Å: Chain A: Y.50, M.52, F.91, S.92, N.168, F.171 Ligands: EPE.2, SO4.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.171 Hydrogen bonds: A:F.91, A:N.168 pi-Stacking: A:Y.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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