SMTL ID : 7hmf.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z1367324110

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x RZJ: 1-methyl-3,4-dihydro-2~{H}-quinoline-7-sulfonamide(Non-covalent)

RZJ.2: 10 residues within 4Å: Chain A: Y.50, P.51, M.52, D.77, F.91, W.105, N.168, G.170, F.171 Ligands: RZJ.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.77, A:N.168, A:F.171 pi-Stacking: A:W.105 RZJ.3: 7 residues within 4Å: Chain A: D.77, S.92, L.93, W.103, W.105, Q.116 Ligands: RZJ.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.103, A:W.105, A:W.105 Hydrogen bonds: A:L.93, A:Q.116

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

Related Entries With Identical Sequence