SMTL ID : 7hmz.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z85893853

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 Ligands: 01.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 01: (3S)-1-[(4-fluorophenyl)acetyl]piperidine-3-carboxylic acid

01.2: 9 residues within 4Å: Chain A: N.19, W.21, S.48, N.49, Y.50, P.51, F.171, Y.173 Ligands: EDO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.21, A:F.171 Hydrogen bonds: A:Y.173, A:Y.173 pi-Stacking: A:W.21

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

Related Entries With Identical Sequence