SMTL ID : 7hnj.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z1162778919

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x 01: 1-[(5-ethyl-1,2,4-oxadiazol-3-yl)methyl]pyridin-2(1H)-one

01.1: 10 residues within 4Å: Chain A: N.19, W.21, M.33, S.48, N.49, Y.50, P.51, F.171, N.172, Y.173 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.171, A:Y.173, A:Y.173 Hydrogen bonds: A:N.172 pi-Stacking: A:W.21

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: F.91, S.92, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.92, A:N.97 Water bridges: A:S.92

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 9 residues within 4Å: Chain A: W.76, D.77, F.91, S.92, L.93, W.103, L.104, N.168, G.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.93, A:N.168, A:N.168 Water bridges: A:F.171 Salt bridges: A:D.77, A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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