SMTL ID : 7hno.1

PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z57450788

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.21, M.33, F.171, N.172, Y.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.172, A:N.172 EDO.3: 5 residues within 4Å: Chain A: Y.50, M.52, D.77, F.91 Ligands: RV4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.91 Water bridges: A:N.168 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x RV4: N-{4-[(morpholin-4-yl)methyl]phenyl}acetamide(Non-covalent)

RV4.2: 9 residues within 4Å: Chain A: A.75, W.76, D.77, W.103, L.104, W.105, Q.116, N.168 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.103, A:W.105 Hydrogen bonds: A:Q.116 Salt bridges: A:D.77

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: F.91, S.92, N.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.92, A:N.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-11-27

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase TRIM21

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