SMTL ID : 7kdz.1

Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to TP-238

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: L.75 No protein-ligand interaction detected (PLIP)

1 x WCS: 6-{4-[3-(dimethylamino)propoxy]phenyl}-2-(methylsulfonyl)-N-[3-(1H-pyrazol-1-yl)propyl]pyrimidin-4-amine(Non-covalent)

WCS.2: 10 residues within 4Å: Chain A: W.36, P.37, F.38, V.42, D.43, D.46, C.89, Y.92, N.93, F.99 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.46, A:F.99, A:F.99 Hydrogen bonds: A:N.93, A:N.93 Water bridges: A:D.46, A:S.97 Salt bridges: A:D.43, A:D.46 pi-Stacking: A:W.36, A:F.99, A:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ycas, P.D. et al., New inhibitors for the BPTF bromodomain enabled by structural biology and biophysical assay development. Organic & Biomolecular Chemistry (2020)

Release Date

2020-12-09

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF

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