SMTL ID : 8u69.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 3-chloro-5-(4-chloro-2-(2-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)benzonitrile (JLJ334), a non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VQ0: 3-chloro-5-{4-chloro-2-[2-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}benzonitrile(Non-covalent)

VQ0.1: 16 residues within 4Å: Chain A: L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, G.192, F.229, W.231, L.236, H.237, P.238, Y.320 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:Y.183, A:L.236 Hydrogen bonds: A:K.105, A:K.105 pi-Stacking: A:Y.190, A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prucha, G.R. et al., Covalent and noncovalent strategies for targeting Lys102 in HIV-1 reverse transcriptase. Eur.J.Med.Chem. (2023)

Release Date

2023-11-08

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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