SMTL ID : 4mfb.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)indolizine-2-carbonitrile (JLJ555), a non-nucleoside inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 29T: 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrile(Non-covalent)

29T.1: 16 residues within 4Å: Chain A: L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, V.191, G.192, F.229, W.231, H.237, P.238, Y.320 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.102, A:V.108, A:V.108, A:V.110, A:Y.190, A:Y.190 Hydrogen bonds: A:K.104, A:K.105 pi-Stacking: A:Y.183, A:Y.190, A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, W.G. et al., Picomolar Inhibitors of HIV Reverse Transcriptase Featuring Bicyclic Replacement of a Cyanovinylphenyl Group. J.Am.Chem.Soc. (2013)

Release Date

2013-11-06

Peptides

HIV-1 reverse transcriptase, p66 subunit: A
HIV-1 reverse transcriptase, p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 reverse transcriptase, p66 subunit

HIV-1 reverse transcriptase, p51 subunit

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