SMTL ID : 7qb1.1

PPARg in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 9WQ: 3-[(3,4-dichlorophenyl)methyl]-4-oxidanylidene-6-phenoxy-phthalazine-1-carboxylic acid(Non-covalent)

9WQ.1: 13 residues within 4Å: Chain A: L.65, E.69, I.91, G.94, C.95, R.98, A.102, I.136, L.140, L.143, I.151, S.152, M.158 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.65, A:R.98, A:L.140, A:I.151, A:I.151, A:I.151 Hydrogen bonds: A:S.152 Salt bridges: A:R.98 9WQ.4: 16 residues within 4Å: Chain B: L.65, E.69, F.74, H.76, R.90, I.91, G.94, C.95, R.98, S.99, A.102, L.140, L.143, I.151, S.152, M.158 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.65, B:E.69, B:F.74, B:F.74, B:F.74, B:R.98, B:L.140, B:I.151 Hydrogen bonds: B:S.152

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: L.47, N.145, F.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.47 SO4.3: 3 residues within 4Å: Chain A: S.239, Q.240 Chain B: Q.225 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.225, A:S.239, A:Q.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Mahony, G. et al., Discovery by Virtual Screening of an Inhibitor of CDK5-Mediated PPAR gamma Phosphorylation. Acs Med.Chem.Lett. (2022)

Release Date

2022-05-04

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Peroxisome proliferator-activated receptor gamma

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