SMTL ID : 7qy7.1

Proteasome-ZFAND5 Complex Z-A state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: V.52, H.112, S.113, H.114 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:V.52, C:S.113

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)(Covalent)

ATP.2: 13 residues within 4Å: Chain M: G.179, C.180, P.218, G.219, T.220, G.221, K.222, T.223, L.224, I.354, H.358, G.382, A.383 11 PLIP interactions: 11 interactions with chain M Hydrogen bonds: M:C.180, M:G.219, M:G.219, M:T.220, M:G.221, M:K.222, M:T.223, M:T.223, M:T.223, M:L.224, M:G.382 ATP.3: 19 residues within 4Å: Chain N: D.186, G.188, G.189, P.228, G.229, T.230, G.231, K.232, T.233, L.234, E.286, N.332, I.364, S.391, G.392, A.393 Chain O: D.273, R.299, R.302 18 PLIP interactions: 4 interactions with chain O, 14 interactions with chain N Salt bridges: O:R.299, O:R.299, O:R.302, O:R.302, N:K.232 Hydrogen bonds: N:D.186, N:G.229, N:G.231, N:K.232, N:T.233, N:T.233, N:L.234, N:E.286, N:N.332, N:N.332, N:N.332, N:G.392, N:A.393 ATP.4: 20 residues within 4Å: Chain O: M.142, I.143, G.144, G.145, P.184, G.185, T.186, G.187, L.190, P.312, I.320, S.347, G.348, A.349 Chain P: D.297, F.299, P.319, R.323, P.324, R.326 8 PLIP interactions: 3 interactions with chain O, 5 interactions with chain P Hydrogen bonds: O:L.146, O:P.184, O:G.187, P:D.297, P:R.326 Salt bridges: P:R.323, P:R.323, P:R.326 ATP.5: 16 residues within 4Å: Chain P: G.168, G.206, P.207, P.208, G.209, G.211, K.212, T.213, M.214, K.217, I.344, I.348, G.372, A.373, N.376 Chain Q: R.305 10 PLIP interactions: 10 interactions with chain P Hydrogen bonds: P:G.168, P:G.168, P:G.209, P:G.211, P:K.212, P:T.213, P:T.213, P:M.214, P:N.376 Salt bridges: P:K.217 ATP.6: 17 residues within 4Å: Chain Q: E.148, I.149, G.150, L.152, P.190, G.191, T.192, G.193, K.194, T.195, L.196, L.197, N.294, I.326, G.354, A.355, R.358 16 PLIP interactions: 16 interactions with chain Q Hydrogen bonds: Q:E.148, Q:G.150, Q:T.192, Q:T.192, Q:G.193, Q:K.194, Q:T.195, Q:T.195, Q:T.195, Q:L.196, Q:L.197, Q:G.354, Q:A.355, Q:R.358 Salt bridges: Q:K.194, Q:K.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, D. et al., Molecular mechanism for activation of the 26S proteasome by ZFAND5. Mol.Cell (2023)

Release Date

2023-02-08

Peptides

26S proteasome non-ATPase regulatory subunit 13: A
26S proteasome non-ATPase regulatory subunit 4: B
26S proteasome non-ATPase regulatory subunit 14: C
26S proteasome non-ATPase regulatory subunit 8: D
26S proteasome complex subunit SEM1: E
26S proteasome non-ATPase regulatory subunit 2: F
26S proteasome non-ATPase regulatory subunit 1: G
26S proteasome non-ATPase regulatory subunit 3: H
26S proteasome non-ATPase regulatory subunit 12: I
26S proteasome non-ATPase regulatory subunit 11: J
26S proteasome non-ATPase regulatory subunit 6: K
26S proteasome non-ATPase regulatory subunit 7: L
26S protease regulatory subunit 7: M
26S protease regulatory subunit 4: N
PSMC5 isoform 15: O
26S protease regulatory subunit 6B: P
26S proteasome regulatory subunit 10B: Q
26S protease regulatory subunit 6A: R
Proteasome subunit alpha type-6: S6
Proteasome subunit alpha type-2: T7
Proteasome subunit alpha type-4: U8
Proteasome subunit alpha type-7: V9
Proteasome subunit alpha type-5: Wa
Isoform Long of Proteasome subunit alpha type-1: Xb
Proteasome subunit alpha type-3: Yc
Proteasome subunit beta type-6: Zd
Proteasome subunit beta type-7: 0e
Proteasome subunit beta type-3: 1f
Proteasome subunit beta type-2: 2g
Proteasome subunit beta type-5: 3h
Proteasome subunit beta type-1: 4i
Proteasome subunit beta type-4: 5j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
b

C
c

D
d

E
e

F
f

G
U

H
V

I
W

J
X

K
Y

L
Z

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

6
g

T
H

7
h

U
I

8
i

V
J

9
j

W
K

a
k

X
L

b
l

Y
M

c
m

Z
N

d
n

0
O

e
o

1
P

f
p

2
Q

g
q

3
R

h
r

4
S

i
s

5
T

j
t

26S proteasome non-ATPase regulatory subunit 13

26S proteasome non-ATPase regulatory subunit 4

26S proteasome non-ATPase regulatory subunit 14

26S proteasome non-ATPase regulatory subunit 8

26S proteasome complex subunit SEM1

26S proteasome non-ATPase regulatory subunit 2

26S proteasome non-ATPase regulatory subunit 1

26S proteasome non-ATPase regulatory subunit 3

26S proteasome non-ATPase regulatory subunit 12

26S proteasome non-ATPase regulatory subunit 11

26S proteasome non-ATPase regulatory subunit 6

26S proteasome non-ATPase regulatory subunit 7

26S protease regulatory subunit 7

26S protease regulatory subunit 4

PSMC5 isoform 15

26S protease regulatory subunit 6B

26S proteasome regulatory subunit 10B

26S protease regulatory subunit 6A

Proteasome subunit alpha type-6

Proteasome subunit alpha type-2

Proteasome subunit alpha type-4

Proteasome subunit alpha type-7

Proteasome subunit alpha type-5

Isoform Long of Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome subunit beta type-6

Proteasome subunit beta type-7

Proteasome subunit beta type-3

Proteasome subunit beta type-2

Proteasome subunit beta type-5

Proteasome subunit beta type-1

Proteasome subunit beta type-4

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