SMTL ID : 7rle.1

Crystal structure of PPAR gamma in complex with CREB-binding protein and agonist GW1929

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EDK: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid(Non-covalent)

EDK.1: 20 residues within 4Å: Chain A: I.80, F.81, G.83, C.84, Q.85, S.88, H.122, I.125, Y.126, L.129, V.138, I.140, M.147, F.159, F.162, M.163, H.248, L.252, L.268, Y.272 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.81, A:F.81, A:Q.85, A:I.125, A:L.129, A:F.162, A:F.162 Hydrogen bonds: A:S.88, A:H.248 Salt bridges: A:H.122, A:H.248 EDK.2: 17 residues within 4Å: Chain C: I.80, F.81, G.83, C.84, Q.85, S.88, H.122, I.125, Y.126, L.129, V.138, I.140, F.162, H.248, L.264, L.268, Y.272 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:I.80, C:F.81, C:Q.85, C:I.125, C:Y.126, C:I.140, C:F.162, C:F.162, C:L.264, C:L.268 Hydrogen bonds: C:S.88, C:S.88, C:Y.272 Salt bridges: C:H.122, C:H.248 pi-Stacking: C:F.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemetchek, M.D. et al., A structural mechanism of nuclear receptor biased agonism. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-08-03

Peptides

Peroxisome proliferator-activated receptor gamma: AC
CREB-binding protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Peroxisome proliferator-activated receptor gamma

CREB-binding protein

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