SMTL ID : 7rxo.1

Crystal structure of CDK2 liganded with compound WN333

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: F.248, E.257, R.260, S.261, S.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.260 Water bridges: A:E.257, A:S.261

1 x 80E: 2-{[2-(1H-indol-3-yl)ethyl]amino}-5-(methoxycarbonyl)benzoic acid(Non-covalent)

80E.2: 15 residues within 4Å: Chain A: K.33, I.35, I.52, L.55, L.58, I.63, V.64, L.78, F.80, C.118, V.123, D.145, F.146, L.148, A.149 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.52, A:L.55, A:L.58, A:I.63, A:L.78, A:F.80, A:V.123, A:F.146, A:F.146, A:F.146, A:L.148, A:L.148 Hydrogen bonds: A:D.145, A:F.146 Water bridges: A:K.33, A:K.33, A:K.33, A:L.66 Salt bridges: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faber, E.B. et al., Screening through Lead Optimization of High Affinity, Allosteric Cyclin-Dependent Kinase 2 (CDK2) Inhibitors as Male Contraceptives That Reduce Sperm Counts in Mice. J.Med.Chem. (2023)

Release Date

2022-08-31

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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