SMTL ID : 7s7a.1

Crystal structure of CDK2 liganded with compound EF3019

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: I.10, A.31, E.81, F.82, L.83, L.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.83 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: L.96, T.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.97

1 x 8FI: 2-{[2-(2H-indazol-3-yl)ethyl]amino}-5-(trifluoromethyl)benzoic acid(Non-covalent)

8FI.2: 17 residues within 4Å: Chain A: Y.15, K.33, I.35, I.52, L.55, L.58, I.63, L.76, L.78, F.80, C.118, V.123, D.145, F.146, L.148, A.149, F.152 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.55, A:L.55, A:L.58, A:I.63, A:L.78, A:F.80, A:V.123, A:F.146, A:F.146, A:F.146, A:L.148, A:L.148 Hydrogen bonds: A:D.145, A:F.146 Water bridges: A:K.33, A:K.33, A:K.33, A:L.55, A:L.66 Salt bridges: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faber, E.B. et al., Screening through Lead Optimization of High Affinity, Allosteric Cyclin-Dependent Kinase 2 (CDK2) Inhibitors as Male Contraceptives That Reduce Sperm Counts in Mice. J.Med.Chem. (2023)

Release Date

2022-09-28

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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