SMTL ID : 7t5z.1 (1 other biounit)

P. aeruginosa LpxA in complex with ligand L8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-trimer

Ligands

3 x F6I: (4S)-N-(1H-tetrazol-5-yl)-2-[3-(trifluoromethyl)benzene-1-sulfonyl]-1,2,3,4-tetrahydroisoquinoline-4-carboxamide(Non-covalent)

F6I.1: 14 residues within 4Å: Chain A: I.130, V.132, N.133, I.148, S.150, G.151, Y.152, F.166, G.168, M.169 Chain B: A.136, A.138, H.156, Q.157 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.130, A:V.132, A:N.133, A:I.148, B:A.138 Hydrogen bonds: A:S.150, A:M.169, B:H.156 pi-Stacking: A:F.166, B:H.156 Halogen bonds: B:A.136 F6I.2: 14 residues within 4Å: Chain B: I.130, V.132, N.133, I.148, S.150, G.151, Y.152, F.166, G.168, M.169 Chain C: A.136, A.138, H.156, Q.157 9 PLIP interactions: 2 interactions with chain C, 7 interactions with chain B Hydrophobic interactions: C:A.138, B:I.130, B:V.132, B:N.133, B:I.148 Halogen bonds: C:A.136 Hydrogen bonds: B:S.150, B:M.169 pi-Stacking: B:F.166 F6I.3: 14 residues within 4Å: Chain A: A.136, A.138, H.156, Q.157 Chain C: I.130, V.132, N.133, I.148, S.150, G.151, Y.152, F.166, G.168, M.169 10 PLIP interactions: 2 interactions with chain A, 8 interactions with chain C Hydrophobic interactions: A:A.138, C:I.130, C:V.132, C:I.148 Halogen bonds: A:A.136 Hydrogen bonds: C:S.150, C:S.150, C:S.150, C:M.169 pi-Stacking: C:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sacco, M.D. et al., Structure-Based Ligand Design Targeting Pseudomonas aeruginosa LpxA in Lipid A Biosynthesis. Acs Infect Dis. (2022)

Release Date

2022-07-06

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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