SMTL ID : 7u3j.1

GID4 in complex with compound 88

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.7, D.18, K.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.18, A:K.40 GOL.3: 3 residues within 4Å: Chain A: T.28, G.29, K.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.28, A:K.104

1 x L6U: (2S)-2-{[(2S)-2-({N-[(2,4-dimethoxyphenyl)methyl]glycyl}amino)-2-(thiophen-2-yl)acetyl]amino}-N-methyl-4-phenylbutanamide(Non-covalent)

L6U.2: 26 residues within 4Å: Chain A: Q.10, S.12, Y.17, L.37, I.39, L.42, L.49, T.50, T.51, E.115, L.118, K.125, D.126, I.127, S.128, G.129, A.130, S.131, F.132, Y.136, Y.151, H.153, S.155, S.156, W.158, Q.160 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.10, A:Y.17, A:L.42, A:L.42, A:A.130, A:W.158 Hydrogen bonds: A:T.51, A:G.129, A:S.131, A:S.131, A:Y.136, A:S.156, A:Q.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chana, C.K. et al., Discovery and Structural Characterization of Small Molecule Binders of the Human CTLH E3 Ligase Subunit GID4. J.Med.Chem. (2022)

Release Date

2022-10-05

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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