SMTL ID : 7u3l.1

GID4 in complex with compound 91

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x L4X: Nalpha-{(2R,4E)-2-[(N-benzylglycyl)amino]-5-phenylpent-4-enoyl}-N,4-dimethyl-L-phenylalaninamide(Non-covalent)

L4X.1: 12 residues within 4Å: Chain A: Q.10, Y.17, L.37, I.39, T.51, E.115, S.131, Y.136, Y.151, H.153, S.156, Q.160 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.39, A:I.39, A:T.51 Hydrogen bonds: A:Q.10, A:E.115, A:S.131, A:Y.136, A:H.153, A:Q.160, A:Q.160 Water bridges: A:Y.151, A:Y.151

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: H.79, Y.152, H.153, S.156, E.157, W.158, Y.159 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.153, A:E.157 Water bridges: A:Y.151, A:S.156, A:S.156, A:Q.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chana, C.K. et al., Discovery and Structural Characterization of Small Molecule Binders of the Human CTLH E3 Ligase Subunit GID4. J.Med.Chem. (2022)

Release Date

2022-10-05

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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