SMTL ID : 7vbc.1

Back track state of human RNA Polymerase I Elongation Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x U- G- C- U- G- A: RNA (5'-R(P*UP*GP*CP*UP*GP*A)-3')(Non-covalent)

U-G-C-U-G-A.1: 23 residues within 4Å: Chain A: R.552, D.590, G.591, D.592 Chain B: R.180, V.455, R.464, M.511, Y.687, Q.690, Q.694, K.882, K.890, H.1004, K.1009 Chain N: T.12, C.13, A.14, G.15, C.16, A.17, A.18 Ligands: MG.4 Protein-ligand interaction information (PLIP) not available

5 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.64, T.66, C.67, C.74, S.75, H.77 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.64, A:C.74, A:H.77, A:H.77 ZN.3: 5 residues within 4Å: Chain A: C.104, C.107, C.205, C.208, G.211 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.104, A:C.205 ZN.5: 5 residues within 4Å: Chain B: C.1070, C.1073, C.1098, L.1100, C.1101 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1070, B:C.1073, B:C.1098, B:C.1101 ZN.6: 4 residues within 4Å: Chain G: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.7, G:C.10, G:C.44, G:C.45 ZN.7: 6 residues within 4Å: Chain I: C.19, C.22, T.24, C.36, R.37, C.39 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.19, I:C.36, I:C.39

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.588, D.590, D.592 Ligands: U-G-C-U-G-A.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.590, A:D.590

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, D. et al., Structure of the human RNA polymerase I elongation complex. Cell Discov (2021)

Release Date

2022-02-16

Peptides

DNA-directed RNA polymerase I subunit RPA1: A
DNA-directed RNA polymerase I subunit RPA2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerases I, II, and III subunit RPABC1: D
DNA-directed RNA polymerases I, II, and III subunit RPABC2: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerases I, II, and III subunit RPABC5: G
DNA-directed RNA polymerases I and III subunit RPAC2: H
DNA-directed RNA polymerases I, II, and III subunit RPABC4: I
DNA-directed RNA polymerase I subunit RPA34: J
DNA-directed RNA polymerase I subunit RPA43: K
DNA-directed RNA polymerase I subunit RPA49: L
DNA-directed RNA polymerase I subunit RPA12: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
J

H
K

I
L

J
N

K
G

L
M

M
I

DNA-directed RNA polymerase I subunit RPA1

DNA-directed RNA polymerase I subunit RPA2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

DNA-directed RNA polymerase I subunit RPA34

DNA-directed RNA polymerase I subunit RPA43

DNA-directed RNA polymerase I subunit RPA49

DNA-directed RNA polymerase I subunit RPA12

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