SMTL ID : 8a40.1

Structure of mammalian Pol II-TFIIS elongation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

11 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 3 residues within 4Å: Chain A: G.83 Chain B: M.1202, Q.1237 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.83 ZN.2: 3 residues within 4Å: Chain A: V.119, D.120, N.123 No protein-ligand interaction detected (PLIP) ZN.4: 5 residues within 4Å: Chain A: C.71, T.73, C.74, C.81, H.84 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.71, A:C.74, A:C.81, A:H.84 ZN.5: 4 residues within 4Å: Chain A: C.111, F.112, C.114, C.184 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.111, A:C.114, A:C.184 ZN.7: 5 residues within 4Å: Chain A: Y.1176, Y.1177 Chain I: L.35, S.51, C.52 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:S.51 ZN.9: 4 residues within 4Å: Chain B: N.1197, L.1198, C.1199, M.1249 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:N.1197, B:L.1198 ZN.10: 4 residues within 4Å: Chain B: C.1196, C.1199, C.1214, C.1217 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1196, B:C.1199, B:C.1214, B:C.1217 ZN.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.12: 4 residues within 4Å: Chain I: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.17, I:C.20, I:C.39, I:C.42 ZN.13: 4 residues within 4Å: Chain I: C.86, C.89, C.114, C.119 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.86, I:C.89, I:C.114, I:C.119 ZN.14: 1 residues within 4Å: Chain P: R.300 No protein-ligand interaction detected (PLIP)

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: T.489, A.494 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain A: D.495, D.497, D.499 Chain N: U.14 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.495, A:D.497, A:D.499, A:D.499 MG.8: 2 residues within 4Å: Chain A: N.493, D.495 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Farnung, L. et al., Structure of a backtracked hexasomal intermediate of nucleosome transcription. Mol.Cell (2022)

Release Date

2023-08-23

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
RNA polymerase II subunit D: D
DNA-directed RNA polymerase II subunit E: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit RPB7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11-a: K
RNA polymerase II subunit K: L
Transcription elongation factor A protein 1: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

P
U

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

Transcription elongation factor A protein 1

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