SMTL ID : 8aqm.2 (1 other biounit)

Crystal structure of PPARG and NCOR2 with an inverse agonist (compound 6a)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x O2O: 2-chloranyl-~{N}-[2-(3-methylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide(Covalent)

O2O.1: 14 residues within 4Å: Chain A: F.84, C.87, Q.88, Y.122, H.125, Y.129, F.165, M.166, K.169, V.248, H.251, Y.275, L.278, Y.279 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.84, A:Y.122, A:H.251, A:Y.275 Hydrogen bonds: A:Y.279, A:Y.279 pi-Stacking: A:F.84, A:H.125, A:H.251, A:Y.279 pi-Cation interactions: A:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and Structure-Based Design of Potent Covalent PPAR gamma Inverse-Agonists BAY-4931 and BAY-0069 . J.Med.Chem. (2022)

Release Date

2022-11-09

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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