SMTL ID : 8aqn.1 (1 other biounit)

Crystal structure of PPARG and NCOR2 with BAY-4931, an inverse agonist (compound 6c)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x O0U: 2-chloranyl-~{N}-[2-(4-ethylphenyl)-1,3-benzoxazol-5-yl]-5-nitro-benzamide(Covalent)

O0U.1: 17 residues within 4Å: Chain A: I.83, F.84, C.87, Q.88, K.121, Y.122, H.125, Y.129, F.165, M.166, K.169, V.248, H.251, Y.275, L.278, Y.279 Chain B: N.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.83, A:F.84, A:F.84, A:K.121, A:Y.122, A:H.251, A:Y.279 Hydrogen bonds: A:Q.88, A:F.165, A:Y.279 pi-Stacking: A:H.125, A:H.125, A:H.251

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.91, E.145, D.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.145 GOL.3: 5 residues within 4Å: Chain B: A.10, R.13, K.14, W.23 Ligands: CA.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.13, B:R.13, B:K.14

1 x CA: CALCIUM ION(Non-functional Binders)

CA.4: 1 residues within 4Å: Ligands: GOL.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and Structure-Based Design of Potent Covalent PPAR gamma Inverse-Agonists BAY-4931 and BAY-0069 . J.Med.Chem. (2022)

Release Date

2022-11-09

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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