SMTL ID : 8b8w.1 (1 other biounit)

Crystal structure of PPARG and NCOR2 with an inverse agonist (compound 7a)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Q2X: 4-chloranyl-~{N}3-phenyl-~{N}1-(phenylmethyl)benzene-1,3-dicarboxamide(Covalent)

Q2X.1: 16 residues within 4Å: Chain A: F.84, C.87, Q.88, R.90, S.91, V.92, H.125, I.128, Y.129, L.132, F.165, H.251, L.255 Chain B: L.8, I.11 Ligands: GOL.2 16 PLIP interactions: 2 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:L.8, B:I.11, A:F.84, A:F.84, A:R.90, A:V.92, A:I.128, A:L.132, A:F.165, A:F.165, A:L.255 Hydrogen bonds: A:C.87, A:Q.88, A:Q.88, A:S.91, A:Y.129

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: I.83, C.87, I.143, L.155 Ligands: Q2X.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and characterization of orally bioavailable 4-chloro-6-fluoroisophthalamides as covalent PPARG inverse-agonists. Bioorg.Med.Chem. (2022)

Release Date

2022-12-28

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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