SMTL ID : 8b93.1 (1 other biounit)

Crystal structure of PPARG and NCOR2 with an inverse agonist (compound 15b)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Q8F: 4-chloranyl-6-fluoranyl-~{N}1-[[4-fluoranyl-2-(2-methoxyethoxymethyl)phenyl]methyl]-~{N}3-[2-methyl-4-(trifluoromethyl)phenyl]benzene-1,3-dicarboxamide(Covalent)

Q8F.1: 18 residues within 4Å: Chain A: F.84, C.87, Q.88, R.90, S.91, V.92, A.94, H.125, I.128, M.131, L.132, L.135, F.165, H.251, V.252, L.255 Chain B: L.8, I.11 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.84, A:R.90, A:R.90, A:V.92, A:A.94, A:I.128, A:L.132, A:F.165, B:L.8 Hydrogen bonds: A:C.87, A:Q.88, A:Q.88, A:S.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and characterization of orally bioavailable 4-chloro-6-fluoroisophthalamides as covalent PPARG inverse-agonists. Bioorg.Med.Chem. (2022)

Release Date

2022-12-28

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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