SMTL ID : 8b92.1 (1 other biounit)

Crystal structure of PPARG and NCOR2 with an inverse agonist (compound SI-2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Q5X: 4-chloranyl-6-fluoranyl-~{N}3-[2-fluoranyl-4-(oxetan-3-yl)phenyl]-~{N}1-[(2-methoxyphenyl)methyl]benzene-1,3-dicarboxamide(Covalent)

Q5X.1: 17 residues within 4Å: Chain A: F.84, C.87, Q.88, R.90, S.91, A.94, V.95, H.125, I.128, Y.129, M.131, L.132, L.135, F.165, H.251, L.255 Chain B: L.8 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.84, A:R.90, A:I.128, A:L.132, A:L.135, A:F.165, A:F.165, B:L.8 Hydrogen bonds: A:C.87, A:Q.88, A:S.91, A:Y.129 Water bridges: A:R.90, A:R.90

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.180, N.226, H.227 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.226, A:N.226 Salt bridges: A:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and characterization of orally bioavailable 4-chloro-6-fluoroisophthalamides as covalent PPARG inverse-agonists. Bioorg.Med.Chem. (2022)

Release Date

2022-12-28

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

Related Entries With Identical Sequence