SMTL ID : 8b94.2 (1 other biounit)

Crystal structure of PPARG and NCOR2 with BAY-5516, an inverse agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Q5O: ~{N}3-[4-[bis(fluoranyl)methoxy]-2-methyl-phenyl]-4-chloranyl-6-fluoranyl-~{N}1-[(4-fluorophenyl)methyl]benzene-1,3-dicarboxamide(Covalent)

Q5O.1: 20 residues within 4Å: Chain A: F.84, C.87, Q.88, R.90, S.91, V.92, A.94, V.95, H.125, I.128, Y.129, M.131, L.132, L.135, F.165, M.166, H.251, L.255 Chain B: L.8, I.11 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.84, A:R.90, A:A.94, A:V.95, A:I.128, A:L.132, A:F.165, A:F.165 Hydrogen bonds: A:C.87, A:Q.88, A:Q.88, A:R.90, A:S.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orsi, D.L. et al., Discovery and characterization of orally bioavailable 4-chloro-6-fluoroisophthalamides as covalent PPARG inverse-agonists. Bioorg.Med.Chem. (2022)

Release Date

2022-12-28

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 2

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