SMTL ID : 8cx0.1

Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x A- A- A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')(Non-covalent)

A-A-A-A-A-A-A-A.1: 27 residues within 4Å: Chain A: R.24, P.25, I.26, L.27, S.28, R.29, N.31, Y.59, W.94, L.123, Y.124, Y.125, W.127, N.177, F.268, K.270 Chain B: R.19, K.22, S.23, K.26, H.27, Y.30, V.31, Y.40, H.42, H.43, Y.44 Protein-ligand interaction information (PLIP) not available

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.257, C.288, C.291 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.257, A:C.288, A:C.291 ZN.3: 4 residues within 4Å: Chain A: H.65, E.67, C.97, C.100 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.65, A:C.97, A:C.100 ZN.4: 5 residues within 4Å: Chain B: H.108, C.114, C.133, Y.135, H.139 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.108, B:C.114, B:C.133, B:H.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.L. et al., The structural basis for HIV-1 Vif antagonism of human APOBEC3G. Nature (2023)

Release Date

2023-02-15

Peptides

DNA dC->dU-editing enzyme APOBEC-3G: A
Virion infectivity factor: B
Core-binding factor subunit beta: C
Elongin-B: D
Elongin-C: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

DNA dC->dU-editing enzyme APOBEC-3G

Virion infectivity factor

Core-binding factor subunit beta

Elongin-B

Elongin-C

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