SMTL ID : 7zlm.1 (3 other biounits)

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound MN551

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x JIH: [4-[(2~{S})-3-[[3-(2-chloranylethanoylamino)phenyl]methylamino]-2-[2-(4-fluorophenyl)ethanoylamino]-3-oxidanylidene-propyl]phenyl] dihydrogen phosphate(Covalent)

JIH.1: 15 residues within 4Å: Chain A: V.26, K.30, R.44, S.46, S.47, T.54, P.63, T.64, N.65, L.66, R.67, I.81, C.82, H.120, L.121 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.54, A:N.65, A:L.66, A:L.66, A:R.67, A:I.81 Hydrogen bonds: A:D.45, A:S.47, A:T.64, A:N.65, A:N.65, A:N.65 Water bridges: A:R.44, A:S.47, A:S.47 Salt bridges: A:R.44, A:R.67 pi-Stacking: A:H.120 pi-Cation interactions: A:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramachandran, S. et al., Structure-based design of a phosphotyrosine-masked covalent ligand targeting the E3 ligase SOCS2. Nat Commun (2023)

Release Date

2023-04-26

Peptides

Suppressor of cytokine signaling 2: A
Elongin-B: B
Elongin-C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Suppressor of cytokine signaling 2

Elongin-B

Elongin-C

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