SMTL ID : 9l6f.1 (7 other biounits)

Crystal structure of KRas G12D (GDP) in complex with ASP3082

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: ASP3082

01.1: 15 residues within 4Å: Chain A: R.19, P.21, F.26, P.36, W.38, F.41, Y.48, P.49, R.57, I.59, H.60, S.61, Y.62, H.65, W.67 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.48, A:Y.48, A:P.49, A:I.59, A:Y.62, A:W.67 Hydrogen bonds: A:R.57, A:H.60, A:Y.62, A:Y.62, A:H.65 pi-Stacking: A:Y.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshinari, T. et al., Discovery of KRAS(G12D) selective degrader ASP3082. Commun Chem (2025)

Release Date

2025-09-03

Peptides

von Hippel-Lindau disease tumor suppressor: A
Elongin-C: B
Elongin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

von Hippel-Lindau disease tumor suppressor

Elongin-C

Elongin-B

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