SMTL ID : 8etj.1

Fkbp39 associated 60S nascent ribosome State 2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain 1: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 1 Metal complexes: 1:C.19, 1:C.22, 1:C.34, 1:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugolini, I. et al., Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell (2022)

Release Date

2022-11-30

Peptides

Protein mak16: C
60S ribosomal protein L3-A: D
60S ribosomal protein L4-B: E
60S ribosomal protein L6: F
60S ribosomal protein L7-B: G
60S ribosomal protein L8: H
60S ribosomal protein L9-A: I
60S ribosomal protein L13: J
60S ribosomal protein L14: K
60S ribosomal protein L15-A: L
60S ribosomal protein L16-B: M
60S ribosomal protein L17-A: N
60S ribosomal protein L18-A: O
60S ribosomal protein L19-A: P
60S ribosomal protein L20-A: Q
60S ribosomal protein L23-A: R
Ribosome assembly factor mrt4: S
60S ribosomal protein L26: T
60S ribosomal protein L28-A: U
Probable nucleolar GTP-binding protein 1: V
60S ribosomal protein L31: W
60S ribosomal protein L32-A: X
60S ribosomal protein L33-B: Y
60S ribosomal protein L35: Z
60S ribosomal protein L36-B: 0
60S ribosomal protein L37-B: 1
Ribosome biogenesis protein nsa2: 2
GTPase grn1: 3
Ribosome biogenesis protein rlp24: 4
AdoMet-dependent rRNA methyltransferase spb1: 5
Eukaryotic translation initiation factor 6: 6
UPF0642 protein C32H8.05: 7
60S ribosomal protein L21-A: 8

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
B

E
C

F
E

G
F

H
G

I
H

J
L

K
M

L
N

M
O

N
P

O
Q

P
R

Q
S

R
V

S
W

T
Y

U
a

V
b

W
d

X
e

Y
f

Z
h

0
i

1
j

2
r

3
s

4
u

5
w

6
y

7
z

8
T

Protein mak16

60S ribosomal protein L3-A

60S ribosomal protein L4-B

60S ribosomal protein L6

60S ribosomal protein L7-B

60S ribosomal protein L8

60S ribosomal protein L9-A

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15-A

60S ribosomal protein L16-B

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L23-A

Ribosome assembly factor mrt4

60S ribosomal protein L26

60S ribosomal protein L28-A

Probable nucleolar GTP-binding protein 1

60S ribosomal protein L31

60S ribosomal protein L32-A

60S ribosomal protein L33-B

60S ribosomal protein L35

60S ribosomal protein L36-B

60S ribosomal protein L37-B

Ribosome biogenesis protein nsa2

GTPase grn1

Ribosome biogenesis protein rlp24

AdoMet-dependent rRNA methyltransferase spb1

Eukaryotic translation initiation factor 6

UPF0642 protein C32H8.05

60S ribosomal protein L21-A

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