SMTL ID : 8fkc.1

Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and inverse agonist SR33544

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Y5F: 2-chloro-N-(5-cyanopyridin-3-yl)-5-nitrobenzamide

Y5F.1: 14 residues within 4Å: Chain A: I.80, F.81, C.84, Q.85, H.122, Y.126, F.162, M.163, K.166, V.245, H.248, Y.272, L.275, Y.276 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.80, A:F.81, A:F.81 Hydrogen bonds: A:Q.85, A:Y.276 pi-Stacking: A:H.248, A:Y.276

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: H.16, K.100, S.101, P.103 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.102, A:G.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacTavish, B.S. et al., Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and SR33544. To Be Published

Release Date

2024-04-17

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 1

Related Entries With Identical Sequence