SMTL ID : 8fkd.1

Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and inverse agonist SR33068

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Y5O: 2-chloro-N-(6-cyanopyridin-3-yl)-5-nitrobenzamide

Y5O.1: 14 residues within 4Å: Chain A: I.80, F.81, C.84, Q.85, H.122, Y.126, F.162, M.163, K.166, V.245, H.248, Y.272, L.275, Y.276 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.80, A:F.81, A:F.81 Hydrogen bonds: A:Q.85, A:Y.276 pi-Stacking: A:H.248, A:Y.276

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: N.134, K.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.33, A:N.134, A:K.135 EDO.3: 5 residues within 4Å: Chain A: E.177, H.224, P.225, E.226, S.227 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.176, A:H.224, A:E.226, A:S.227 EDO.4: 4 residues within 4Å: Chain A: M.51, S.263, L.264, H.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacTavish, B.S. et al., Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and SR33068. To Be Published

Release Date

2024-04-17

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 1

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