SMTL ID : 8p4a.1

Structural insights into human co-transcriptional capping - structure 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.495, D.497, D.499 Chain B: U.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.495, A:D.497, A:D.499, A:D.499

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.111, C.114, C.184, Y.187 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.111, A:C.114 ZN.3: 4 residues within 4Å: Chain A: C.71, C.74, C.81, H.84 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.71, A:C.74, A:C.81, A:H.84 ZN.4: 4 residues within 4Å: Chain C: C.1119, C.1122, C.1137, C.1140 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.1119, C:C.1122, C:C.1137 ZN.5: 4 residues within 4Å: Chain D: C.88, C.90, C.94, C.97 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.88, D:C.90, D:C.94, D:C.97 ZN.6: 4 residues within 4Å: Chain J: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.17, J:C.20, J:C.39, J:C.42 ZN.7: 5 residues within 4Å: Chain J: C.86, C.89, C.114, C.119, H.121 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.86, J:C.89, J:C.114, J:C.119 ZN.8: 6 residues within 4Å: Chain K: C.7, T.9, C.10, R.42, C.44, C.45 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.7, K:C.10, K:C.44, K:C.45 ZN.9: 5 residues within 4Å: Chain M: C.19, C.22, T.24, C.36, E.38 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:C.22, M:C.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, G. et al., Structural insights into human co-transcriptional capping. Mol.Cell (2023)

Release Date

2023-08-16

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase II subunit RPB3: D
RNA polymerase II subunit D: E
DNA-directed RNA polymerase II subunit E: F
DNA-directed RNA polymerase II subunit F: G
DNA-directed RNA polymerase II subunit RPB7: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3: I
DNA-directed RNA polymerase II subunit RPB9: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5: K
DNA-directed RNA polymerase II subunit RPB11-a: L
RNA polymerase II subunit K: M
mRNA-capping enzyme: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

D
C

E
D

F
E

G
F

H
G

I
H

J
I

K
J

L
K

M
L

P
M

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

mRNA-capping enzyme

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