SMTL ID : 8p4b.1

Structural insights into human co-transcriptional capping - structure 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.71, C.74, C.81, P.82, H.84 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.71, A:C.74, A:H.84 ZN.2: 4 residues within 4Å: Chain A: C.111, C.114, C.184, Y.187 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.111, A:C.114 ZN.4: 4 residues within 4Å: Chain B: C.1119, C.1122, C.1137, C.1140 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1119, B:C.1122, B:C.1137, B:C.1140 ZN.5: 4 residues within 4Å: Chain C: C.88, C.90, C.94, C.97 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.88, C:C.90, C:C.94, C:C.97 ZN.6: 4 residues within 4Å: Chain G: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.17, G:C.20, G:C.39, G:C.42 ZN.7: 4 residues within 4Å: Chain G: C.86, C.89, C.114, C.119 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.86, G:C.89, G:C.114, G:C.119 ZN.8: 4 residues within 4Å: Chain H: C.7, C.10, C.44, C.45 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.7, H:C.44, H:C.45 ZN.9: 5 residues within 4Å: Chain J: C.19, C.22, C.36, E.38, C.39 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.19, J:C.22, J:C.36, J:C.39

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.495, D.497, D.499 Chain L: U.22 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.497, A:D.497, A:D.499, A:D.499

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, G. et al., Structural insights into human co-transcriptional capping. Mol.Cell (2023)

Release Date

2023-08-16

Peptides

DNA-directed RNA polymerase II subunit RPB1: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit E: D
DNA-directed RNA polymerase II subunit F: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerase II subunit RPB9: G
DNA-directed RNA polymerases I, II, and III subunit RPABC5: H
DNA-directed RNA polymerase II subunit RPB11-a: I
RNA polymerase II subunit K: J
RNA polymerase II subunit D: N
DNA-directed RNA polymerase II subunit RPB7: O
mRNA-capping enzyme: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
I

H
J

I
K

J
L

N
D

O
G

P
M

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RNA polymerase II subunit K

RNA polymerase II subunit D

DNA-directed RNA polymerase II subunit RPB7

mRNA-capping enzyme

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