SMTL ID : 8p8a.1

Structure of 5D3-Fab and nanobody(Nb17)-bound ABCG2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain B: T.30, S.31, F.54, D.55 Chain F: N.596, T.598, G.599 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain D: T.30, S.31, F.54 Chain G: N.596, T.598, G.599 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irobalieva, R.N. et al., Structural Basis of the Allosteric Inhibition of Human ABCG2 by Nanobodies. J.Mol.Biol. (2023)

Release Date

2023-08-30

Peptides

5D3(Fab) light chain variable domain: AC
5D3(Fab) heavy chain variable domain: BD
Nanobody: E
ATP-binding cassette sub-family G member 2: FG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
E

B
D

D
F

E
Z

F
A

G
B

Membrane

We predict this structure to be a membrane protein.
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5D3(Fab) light chain variable domain

5D3(Fab) heavy chain variable domain

Nanobody

ATP-binding cassette sub-family G member 2

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