SMTL ID : 8p8j.1

Structure of 5D3-Fab and nanobody(Nb96)-bound ABCG2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.596, T.598 Chain C: T.30, S.31, F.54 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.596, A:T.598 Hydrophobic interactions: C:F.54 NAG.2: 5 residues within 4Å: Chain D: N.596, T.598 Chain F: T.30, S.31, F.54 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:N.596 Hydrophobic interactions: F:F.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irobalieva, R.N. et al., Structural Basis of the Allosteric Inhibition of Human ABCG2 by Nanobodies. J.Mol.Biol. (2023)

Release Date

2023-08-30

Peptides

ATP-binding cassette sub-family G member 2: AD
5D3(Fab) light chain variable domain: BG
5D3(Fab) heavy chain variable domain: CF
Nanobody: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
E

G
C

C
F

F
D

E
Z

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family G member 2

5D3(Fab) light chain variable domain

5D3(Fab) heavy chain variable domain

Nanobody

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