SMTL ID : 8pxo.1

ABCG2 in complex with AZ99 and 5D3 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 4 residues within 4Å: Chain C: T.30, S.31, F.54 Chain D: N.606 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: T.30, S.31, F.54 Chain E: N.606 No protein-ligand interaction detected (PLIP)

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 5 residues within 4Å: Chain D: Y.580, F.581, Y.586, W.634, C.645 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.581, D:F.581 CLR.4: 6 residues within 4Å: Chain D: S.477, L.481, V.648, L.651, T.652, Y.655 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.481, D:L.481, D:L.651, D:L.651, D:Y.655, D:Y.655, D:Y.655 CLR.7: 5 residues within 4Å: Chain E: Y.580, F.581, Y.586, W.634, C.645 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.581, E:F.581 CLR.8: 6 residues within 4Å: Chain E: S.477, L.481, V.648, L.651, T.652, Y.655 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:L.481, E:V.648, E:L.651, E:L.651, E:Y.655, E:Y.655

2 x I3T: (2S,5S,8S)-14-cyclopentyloxy-2-(2-methylpropyl)-5-(phenylmethyl)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraene-4,7-dione(Non-covalent)

I3T.5: 15 residues within 4Å: Chain D: F.449, L.549, T.552, I.553, V.556, M.559, L.565 Chain E: V.411, F.441, F.442, T.445, N.446, F.449, S.450 Ligands: I3T.6 13 PLIP interactions: 6 interactions with chain E, 7 interactions with chain D Hydrophobic interactions: E:V.411, E:F.441, E:F.442, E:F.449, D:F.449, D:L.549, D:T.552, D:I.553, D:V.556, D:V.556, D:L.565 Hydrogen bonds: E:N.446 pi-Stacking: E:F.449 I3T.6: 15 residues within 4Å: Chain D: V.411, F.441, F.442, T.445, N.446, F.449, S.450 Chain E: F.449, L.549, T.552, I.553, V.556, M.559, L.565 Ligands: I3T.5 12 PLIP interactions: 6 interactions with chain E, 6 interactions with chain D Hydrophobic interactions: E:F.449, E:L.549, E:T.552, E:I.553, E:V.556, E:L.565, D:V.411, D:F.441, D:F.442, D:F.449 Hydrogen bonds: D:N.446 pi-Stacking: D:F.449

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Q. et al., Modulation of ABCG2 Transporter Activity by Ko143 Derivatives. Acs Chem.Biol. (2024)

Release Date

2024-11-06

Peptides

5D3(Fab) heavy chain variable domain|Mus musculus: AC
5D3(Fab) light chain variable domain: BF
Broad substrate specificity ATP-binding cassette transporter ABCG2: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
F

B
E

F
C

D
B

E
A

Membrane

We predict this structure to be a membrane protein.
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5D3(Fab) heavy chain variable domain|Mus musculus

5D3(Fab) light chain variable domain

Broad substrate specificity ATP-binding cassette transporter ABCG2

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