SMTL ID : 8q7b.1

ABCG2 in complex with MZ29 and 5D3 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: T.30, S.31, F.54 Chain D: N.596, G.599 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: T.30, S.31, F.54, D.55 Chain E: N.596, G.599 No protein-ligand interaction detected (PLIP)

10 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain D: Y.570, F.571, Y.576, K.628, A.632, C.635, M.636, I.639, F.640 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:F.571, D:F.571, D:Y.576, D:K.628, D:I.639, D:I.639, D:F.640 CLR.4: 11 residues within 4Å: Chain D: M.523, A.526, I.527, C.544, M.548, F.551, L.568, F.571, S.572, F.640, I.643 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.527, D:F.551, D:F.551, D:F.571, D:F.640, D:I.643 CLR.5: 7 residues within 4Å: Chain D: S.467, L.471, I.637, V.638, L.641, T.642, Y.645 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.471, D:V.638, D:L.641, D:Y.645, D:Y.645 Hydrogen bonds: D:S.467 CLR.6: 6 residues within 4Å: Chain D: R.378, S.381, K.382, F.385, L.475, P.480 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:R.378, D:F.385, D:F.385, D:F.385, D:L.475, D:P.480 CLR.7: 7 residues within 4Å: Chain D: D.504, F.507, V.508, M.510, F.511, M.514, W.627 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.507, D:F.511, D:F.511, D:W.627 CLR.10: 9 residues within 4Å: Chain E: Y.570, F.571, Y.576, K.628, A.632, C.635, M.636, I.639, F.640 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:F.571, E:F.571, E:Y.576, E:K.628, E:I.639, E:F.640 CLR.11: 13 residues within 4Å: Chain E: M.523, A.526, I.527, L.540, C.544, F.547, M.548, F.551, L.568, F.571, S.572, F.640, K.647 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:I.527, E:L.540, E:F.547, E:F.551, E:F.551, E:F.571, E:F.640 CLR.12: 7 residues within 4Å: Chain E: S.467, L.471, I.637, V.638, L.641, T.642, Y.645 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:L.471, E:V.638, E:L.641, E:Y.645, E:Y.645 Hydrogen bonds: E:S.467 CLR.13: 6 residues within 4Å: Chain E: R.378, S.381, K.382, F.385, L.475, P.480 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:R.378, E:F.385, E:F.385, E:F.385, E:L.475, E:P.480 CLR.14: 7 residues within 4Å: Chain E: D.504, F.507, V.508, M.510, F.511, M.514, W.627 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.508, E:F.511, E:W.627

2 x BWQ: ~{tert}-butyl 3-[(2~{S},5~{S},8~{S})-14-cyclopentyloxy-2-(2-methylpropyl)-4,7-bis(oxidanylidene)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraen-5-yl]propanoate(Non-covalent)

BWQ.8: 17 residues within 4Å: Chain D: L.539, T.542, I.543, V.546, M.549, L.555 Chain E: A.397, Q.398, V.401, F.431, F.432, T.435, N.436, F.439, S.440, M.549 Ligands: BWQ.9 16 PLIP interactions: 10 interactions with chain E, 6 interactions with chain D Hydrophobic interactions: E:A.397, E:V.401, E:V.401, E:F.431, E:F.432, E:F.439, E:F.439, E:F.439, D:L.539, D:T.542, D:I.543, D:V.546, D:V.546, D:L.555 Hydrogen bonds: E:T.435, E:N.436 BWQ.9: 17 residues within 4Å: Chain D: A.397, Q.398, V.401, F.431, F.432, T.435, N.436, F.439, S.440, M.549 Chain E: L.539, T.542, I.543, V.546, M.549, L.555 Ligands: BWQ.8 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain E Hydrophobic interactions: D:A.397, D:V.401, D:V.401, D:F.431, D:F.432, D:F.439, D:F.439, D:F.439, E:T.542, E:V.546, E:V.546, E:L.555 Hydrogen bonds: D:T.435, D:N.436

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Q. et al., Modulation of ABCG2 Transporter Activity by Ko143 Derivatives. Acs Chem.Biol. (2024)

Release Date

2024-11-06

Peptides

5D3(Fab) heavy chain variable domain: AC
5D3(Fab) light chain variable domain: BF
ATP-binding cassette sub-family G member 2: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
F

B
E

F
C

D
B

E
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

5D3(Fab) heavy chain variable domain

5D3(Fab) light chain variable domain

ATP-binding cassette sub-family G member 2

Related Entries With Identical Sequence