SMTL ID : 8pob.1

Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-SO3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x TB: TERBIUM(III) ION(Non-covalent)(Non-functional Binders)

TB.1: 2 residues within 4Å: Chain A: D.119 Ligands: ZW0.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.119, A:D.119 TB.2: 1 residues within 4Å: Ligands: ZW0.3 No protein-ligand interaction detected (PLIP)

1 x ZW0: 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-(3-sulfopropyl)-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid(Non-covalent)

ZW0.3: 9 residues within 4Å: Chain A: W.80, W.81, L.93, D.119, G.120, N.121, A.125 Ligands: TB.1, TB.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.120 Water bridges: A:N.121 Salt bridges: A:D.119, A:D.119, A:D.119 pi-Cation interactions: A:W.80

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: Y.41, G.122 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: S.42, G.44, V.138, Q.139, I.142 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: F.21, A.29, R.32, H.33, D.105, I.106 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: P.88, G.89, S.90 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: Q.75, I.76, N.77, W.81, I.116 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 7 residues within 4Å: Chain A: S.78, C.82, N.83, D.84, T.87, S.90, R.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roux, A. et al., Influence of Chemical Modifications of the Crystallophore on Protein Nucleating Properties and Supramolecular Interactions Network. Chemistry (2024)

Release Date

2024-07-10

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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