SMTL ID : 8rc1.1

MAP7 MTBD (microtubule binding domain) decorated microtubule protofilament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-mer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 21 residues within 4Å: Chain A: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228 Chain B: L.246, K.252 Ligands: MG.2 23 PLIP interactions: 20 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.11, A:A.12, A:A.99, A:A.100, A:N.101, A:S.140, A:G.143, A:G.144, A:T.145, A:T.145, A:G.146, A:T.179, A:E.183, A:E.183, A:N.206, A:N.206, A:N.228, A:N.228 pi-Stacking: A:Y.224 pi-Cation interactions: A:Y.224 Salt bridges: B:K.252, B:K.252, B:K.252 GTP.4: 18 residues within 4Å: Chain C: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, T.179, N.206, Y.224, N.228 Ligands: MG.5 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:Q.11, C:A.12, C:A.99, C:A.100, C:N.101, C:N.101, C:S.140, C:G.144, C:T.145, C:T.145, C:G.146, C:T.179, C:T.179, C:N.206, C:N.206, C:Y.224, C:N.228, C:N.228 pi-Cation interactions: C:Y.224

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.69 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain C: Q.11, D.69 Ligands: GTP.4 No protein-ligand interaction detected (PLIP)

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 14 residues within 4Å: Chain B: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, N.226 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:Q.11, B:Q.11, B:C.12, B:N.99, B:N.99, B:S.138, B:G.142, B:T.143, B:T.143, B:T.143, B:T.143, B:G.144, B:E.181, B:N.204, B:N.204, B:N.226, B:N.226 pi-Cation interactions: B:Y.222 GDP.6: 14 residues within 4Å: Chain D: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, N.226 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:Q.11, D:Q.11, D:C.12, D:S.138, D:G.142, D:T.143, D:T.143, D:T.143, D:T.143, D:G.144, D:E.181, D:N.204, D:N.226, D:N.226, D:N.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adler, A. et al., A structural and dynamic visualization of the interaction between MAP7 and microtubules. Nat Commun (2024)

Release Date

2024-03-13

Peptides

Tubulin alpha-1B chain: AC
Tubulin beta chain: BD
Microtubule associated protein 7 (MAP7): E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

Tubulin alpha-1B chain

Tubulin beta chain

Microtubule associated protein 7 (MAP7)

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