SMTL ID : 8s15.1

c-KIT kinase domain in complex with nintedanib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x XIN: methyl (3Z)-3-{[(4-{methyl[(4-methylpiperazin-1-yl)acetyl]amino}phenyl)amino](phenyl)methylidene}-2-oxo-2,3-dihydro-1H-indole-6-carboxylate(Non-covalent)

XIN.1: 17 residues within 4Å: Chain A: L.48, G.49, V.56, E.58, A.74, K.76, V.107, T.123, E.124, Y.125, C.126, C.127, G.129, D.130, L.192, D.203, F.204 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.56, A:V.56, A:V.107, A:Y.125, A:L.192, A:L.192, A:F.204 Hydrogen bonds: A:E.124, A:C.126, A:C.126 Salt bridges: A:E.58, A:E.58, A:K.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., c-KIT kinase domain in complex with nintedanib. To Be Published

Release Date

2025-09-03

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor Kit

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