SMTL ID : 8son.1

Crystal structure of macrophage migration inhibitory factor in complex with N-[3-(Trifluoromethyl)phenyl]-3-(2-chloroanilino)-2-cyano-3-thioxopropanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: P.1, M.2, H.62, S.63, I.64, M.101, V.106 Chain C: Y.95, N.97 Ligands: 30Y.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:P.1, A:P.1, A:I.64, C:N.97, C:N.97 GOL.4: 10 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, H.62, S.63, I.64, M.101, V.106 Ligands: 30Y.6 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.97, A:N.97, B:P.1, B:I.64 GOL.7: 9 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, H.62, S.63, I.64, M.101, V.106 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:N.97, B:N.97, C:P.1, C:P.1, C:I.64

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.5: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.68, B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.8: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.69, C:A.70, C:Q.71, C:Q.71 Water bridges: C:R.73

2 x 30Y: (2R)-3-[(2-chlorophenyl)amino]-2-cyano-3-thioxo-N-[3-(trifluoromethyl)phenyl]propanamide

30Y.3: 10 residues within 4Å: Chain A: P.1, K.32, Q.35, Y.36, I.64, W.108, F.113 Chain C: F.49, Y.95 Ligands: GOL.1 11 PLIP interactions: 3 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:F.49, A:Y.36, A:Y.36, A:I.64, A:I.64, A:W.108, A:F.113, A:F.113 Hydrogen bonds: C:Y.95, C:Y.95, A:P.1 30Y.6: 10 residues within 4Å: Chain A: F.49, Y.95 Chain B: P.1, K.32, Q.35, Y.36, I.64, W.108, F.113 Ligands: GOL.4 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.36, B:Y.36, B:I.64, B:I.64, B:W.108, B:F.113, B:F.113, A:F.49 Water bridges: B:Y.36 Hydrogen bonds: A:Y.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pantouris, G. et al., Crystal structure of the macrophage migration inhibitory factor in complex with N-[3-(Trifluoromethyl)phenyl]-3-(2-chloroanilino)-2-cyano-3-thioxopropanamide. To Be Published

Release Date

2024-05-22

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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