SMTL ID : 8spn.1

Crystal structure of macrophage migration inhibitory factor in complex with T614

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-trimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.5: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.69, C:A.70, C:Q.71, C:Q.71

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.70 Hydrogen bonds: B:A.70, B:Q.71, B:Q.71

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.92 Chain B: Q.35, Y.36, W.108 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.92, A:D.92, B:Q.35, B:Y.36

1 x 7TN: Iguratimod

7TN.4: 8 residues within 4Å: Chain B: Y.95 Chain C: P.1, K.32, Y.36, S.63, I.64, W.108, F.113 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.64, C:F.113, C:F.113, C:F.113 Hydrogen bonds: C:P.1, C:K.32, C:I.64 pi-Stacking: C:Y.36, C:Y.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bloom, J. et al., Iguratimod, an allosteric inhibitor of macrophage migration inhibitory factor (MIF), prevents mortality and oxidative stress in a murine model of acetaminophen overdose. Mol Med (2024)

Release Date

2024-05-01

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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