SMTL ID : 8x7g.1

Crystal structure of the ternary complex of GID4-PROTAC(NEP108)-BRD4(BD1).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YAX: 2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]-~{N}-[2-[2-[[2-[4-[2-(1~{H}-indol-2-ylmethylamino)ethanoylamino]cyclohexyl]-3~{H}-benzimidazol-5-yl]oxy]ethoxy]ethyl]ethanamide

YAX.1: 28 residues within 4Å: Chain A: Q.10, Y.17, L.37, L.49, T.51, E.115, L.118, D.126, I.127, S.128, S.131, F.132, Y.136, Y.151, S.156, Q.160 Chain B: W.39, P.40, F.41, Q.43, V.45, L.50, L.52, Y.97, N.98, D.103, I.104, M.107 18 PLIP interactions: 8 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.49, A:I.127, A:F.132, A:Y.151, B:W.39, B:W.39, B:P.40, B:F.41, B:V.45, B:L.50, B:L.52, B:I.104 Hydrogen bonds: A:Q.10, A:E.115, A:S.131, A:Y.136, B:N.98, B:N.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Crystal structure of 108. To Be Published

Release Date

2025-03-26

Peptides

Glucose-induced degradation protein 4 homolog: A
Bromodomain-containing protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-induced degradation protein 4 homolog

Bromodomain-containing protein 4

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